What’s new in h5py 2.7

Python 3.2 is no longer supported

h5py 2.7 drops Python 3.2 support, and testing is not longer preformed on Python 3.2. The latest versions of pip, virtualenv, setuptools and numpy do not support Python 3.2, and dropping 3.2 allows both u and b prefixes to be used for strings. A clean up of some of the legacy code was done in #675 by Andrew Collette.

Additionally, support for Python 2.6 is soon to be dropped for pip (See https://github.com/pypa/pip/issues/3955) and setuptools (See https://github.com/pypa/setuptools/issues/878), and numpy has dropped Python 2.6 also in the latest release. While h5py has not dropped Python 2.6 this release, users are strongly encouraged to move to Python 2.7 where possible.

Improved testing support

There has been a major increase in the number of configurations h5py is automatically tested in, with Windows CI support added via Appveyor (#795, #798, #799 and #801 by James Tocknell) and testing of minimum requirements to ensure we still satisfy them (#703 by James Tocknell). Additionally, tox was used to ensure that we don’t run tests on Python versions which our dependencies have dropped or do not support (#662, #700 and #733). Thanks to to the Appveyor support, unicode tests were made more robust (#788, #800 and #804 by James Tocknell). Finally, other tests were improved or added where needed (#724 by Matthew Brett, #789, #794 and #802 by James Tocknell).

Improved python compatibility

The ipython/jupyter completion support now has Python 3 support (#715 by Joseph Kleinhenz). h5py now supports pathlib filenames (#716 by James Tocknell).

Documentation improvements

An update to the installation instructions and some whitespace cleanup was done in #808 by Thomas A Caswell, and mistake in the quickstart was fixed by Joydeep Bhattacharjee in #708.

setup.py improvements

Support for detecting the version of HDF5 via pkgconfig was added by Axel Huebl in #734, and support for specifying the path to MPI-supported HDF5 was added by Axel Huebl in #721. h5py's classifiers were updated to include supported python version and interpreters in #811 by James Tocknell.

Support for additional HDF5 features added

Low-level support for HDF5 Direct Chunk Write was added in #691 by Simon Gregor Ebner. Minimal support for HDF5 File Image Operations was added by Andrea Bedini in #680. Ideas and opinions for further support for both HDF5 Direct Chunk Write and HDF5 File Image Operations are welcome. High-level support for reading and writing null dataspaces was added in #664 by James Tocknell.

Improvements to type system

Reading and writing of compound datatypes has improved, with support for different orderings and alignments (#701 by Jonah Bernhard, #702 by Caleb Morse #738 by @smutch, #765 by Nathan Goldbaum and #793 by James Tocknell). Support for reading extended precision and non-standard floating point numbers has also been added (#749, #812 by Thomas A Caswell, #787 by James Tocknell and #781 by Martin Raspaud). Finally, compatibility improvements to Cython annotations of HDF5 types were added in #692 and #693 by Aleksandar Jelenak.

Other changes

  • Fix deprecation of - for numpy boolean arrays (#683 by James Tocknell)
  • Check for duplicates in fancy index validation (#739 by Sam Toyer)
  • Avoid potential race condition (#754 by James Tocknell)
  • Fix inconsistency when slicing with numpy.array of shape (1,) (#772 by Artsiom)
  • Use size_t to store Python object id (#773 by Christoph Gohlke)
  • Avoid errors when the Python GC runs during nonlocal_close() (#776 by Antoine Pitrou)
  • Move from six.PY3 to six.PY2 (#686 by James Tocknell)

Acknowlegements